miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|158372017|gb|EX680402.1|EX680402 CGGCTACTGAGGCCGCCTGGCCGCCGCGGAAGAGCGTCGTCGCCTGCGCCGGAGTTTGCCGGAGCTGGAGGATTTTGACC
AAGGAGATCGTTAAGTCTCCTGAGCTCTCCGGGAAGCTCACCTTCCCCATCTCCGTCAAGCAGCCTGGTCCAAGGGAGGA
ACTCCTACGGTGCTTTATAAAGCGGAACCGATCCACCCAGACATATTATCTTTACCTCGGTTTGACCCATGCATTAACTG
ATGAGGGAAAGTTCCTACTTGCTGCTCGCAAGTATAAACGCCCAACCTGCACCGATTATATTATCTCACTAAATGGTGAT
GATATGTCAAAGGGCAGCAGCAACTATATTGGAAAACTGAGATCAAACTTTTTGGGAACAAAGTTCACCATCTTTGATGG
GCAGCCAACTGATGTGGGAGCCAAGTTTACAAAAAGTCGATCCACTAGGCTAGTGAATTTGAAACAAGTTTCGCCTAGGG
TCCCTGCTGGCAACTATCCTGTGGCTCACATTTCCTACGAACTAAATATGTTGGGTTCCAGGGGTCCAAGGAGAATGCAA
TGTACCATGGATGGAATTCCTGCCACGTCGATTCAACCTGGAGGAGTAGCACCCATGCAGGCAGAGTTTTCAAGTAGCAC
TGCCGAGTTCTTTCCGTCCCTTCCATTTTTCCGTTCAAAATCAACTCGCATGGAAAGTTTCCTAGGGCCTTCTGCGAAAC
CAAAAGATGGGGTCATCGTGTTAAGAAACAAAGCTCCAAGGTGGCACGAACAACTCCAGTGTTGGTGCTTGAACTTTCAT
GGAAGAGTAACAGTTGCTTCAGTGAAAAACTTTCAGTTGGTTGCTTCTCCAGAAAATGGGCCAGCTGGGCCAGAGCACG




Most similar to sp|Q8VY21|TLP3_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q8VY21|TLP3_ARATH Tubby-like F-box protein 3 OS=Arabidopsis
           thaliana GN=TULP3 PE=2 SV=1
          Length = 406

 Score =  442 bits (1138), Expect = e-123
 Identities = 210/294 (71%), Positives = 252/294 (85%), Gaps = 3/294 (1%)
 Frame = +3

Query: 6   TEAAWPPRKSVVACAGVCRSWRILTKEIVKSPELSGKLTFPISVKQPGPREELLRCFIKR 185
           +E  WP RK+VV+CAGVCR+WR + KEIV+ PELS KLTFPIS+KQPGPR  L++C+I R
Sbjct: 70  SEDTWPSRKNVVSCAGVCRNWREIVKEIVRVPELSSKLTFPISLKQPGPRGSLVQCYIMR 129

Query: 186 NRSTQTYYLYLGLTHALT-DEGKFLLAARKYKRPTCTDYIISLNGDDMSKGSSNYIGKLR 362
           NRS QTYYLYLGL  A + D+GKFLLAA++++RPTCTDYIISLN DD+S+GS+ YIGKLR
Sbjct: 130 NRSNQTYYLYLGLNQAASNDDGKFLLAAKRFRRPTCTDYIISLNCDDVSRGSNTYIGKLR 189

Query: 363 SNFLGTKFTIFDGQPTDVGAKFTKSRSTRLVNLKQVSPRVPAGNYPVAHISYELNMLGSR 542
           SNFLGTKFT++D QPT+ G + T++RS+RL++LKQVSPR+P+GNYPVAHISYELN+LGSR
Sbjct: 190 SNFLGTKFTVYDAQPTNPGTQVTRTRSSRLLSLKQVSPRIPSGNYPVAHISYELNVLGSR 249

Query: 543 GPRRMQCTMDGIPATSIQPGGVAPMQAEFSSSTAEFFPSLPFFRSKSTRMESF-LGP-SA 716
           GPRRMQC MD IPA++++PGG AP Q E   S  + FPS  FFRSKS R ES   GP SA
Sbjct: 250 GPRRMQCVMDAIPASAVEPGGTAPTQTELVHSNLDSFPSFSFFRSKSIRAESLPSGPSSA 309

Query: 717 KPKDGVIVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGPEH 878
             K+G++VL+NKAPRWHEQLQCWCLNF+GRVTVASVKNFQLVA+PENGPAGPEH
Sbjct: 310 AQKEGLLVLKNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVAAPENGPAGPEH 363